combined_ark_data DDI-MWI-MEIRU-ARK-2018-v01 Malawi Epidemiology and Intervention Research Unit Estelle McLean Chifundo Kanjala Jacky Saul Kieth Branson Dominic Nzundah 2020-07-14 Nesstar Publisher version 1 (July, 2020) DDI-MWI-MEIRU-ARK-2018-v01 Professor Amelia (Mia) Crampin Professor Moffat Nyirenda Dr Charles Mwansambo Dr. Joseph Mkandawire Dr Josephine Prynn Dr Gavin Dreyer Dr Laurie Tomlinson Dr Dorothea Nitsch Professor Liam Smeeth Dr Robert Kaylesubula Professor Janet Seeley Dr Robert Newton Dr Anatoli Kamali Nesstar Publisher Glaxo Smith Kline (GSK) Africa NCD Open Lab 8111 Sample Survey African Research into Kidney Disease (ARK) is a collaboration between researchers at centers in South Africa, Malawi, Uganda and LSHTM studying the best way to define kidney disease and studying its prevalence in large population-representative cohorts. Iohexol GFR Malawi Individual Malawi Epidemiology and Intervention Research Unit Face-to-face [f2f] MEIRU Malawi Epidemiology and Intervention Research Unit ark_combined_final_meiruid.NSDstat 1321 286 Nesstar 200801 Malawi Epidemiology and Interventions Research Unit ark_iohex_results.NSDstat 4006 9 Nesstar 200801 Malawi Epidemiology and Interventions Research Unit Karonga/Lilongwe (D) 1321 0 Karonga/Lilongwe 1 Karonga 663 2 Lilongwe 658 3 Other 0 Study id (S) Study identifier 1125 196 Study id variable: stid (table[s]: arkk_fieldlog, arkl_fieldlog) NCD stid (S) Study identifier 652 0 NCD stid Participant ID (D) 1125 0 Participant ID Visit no of successful visit 1262 59 Visit 1 First visit 992 2 Second visit 93 3 Third visit 33 4 Missed 129 5 Both 0 6 Died 3 7 Ineligible 0 8 Left 12 Sysmiss 59 variable: visit (table[s]: arkk_fieldlog, arkl_fieldlog) Lilongwe house number (S) House number 652 0 Lilongwe house number variable: lhhno (table[s]: arkl_fieldlog) Karonga house id (D) 658 0 Karonga house id House Number (D) 1321 0 House Number Print date 652 Print date variable: print_date (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 1 date 1262 Phase 1 date variable: ph1_date (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 1 eligible (S) Phase 1 eligible 1118 203 Phase 1 eligible 0 No 61 1 Yes 1057 8 Unknown 0 9 Missing 0 Sysmiss 203 variable: ph1elig (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 1 consent 1118 203 Phase 1 consent 0 No 99 1 Yes 1019 8 Unknown 0 9 Missing 0 Sysmiss 203 variable: ph1consent (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 1 complete 1118 203 Phase 1 complete 0 No 99 1 Yes 1019 8 Unknown 0 9 Missing 0 Sysmiss 203 variable: ph1complete (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 2 arranged date 1022 Phase 2 arranged date variable: ph2_arrdate (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 1 Recorder 1262 0 Phase 1 staffcode variable: ph1rcdr (table[s]: arkk_fieldlog, arkl_fieldlog) Actual Phase 2 date 979 Actual Phase 2 date variable: ph2_date (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 2 eligible 979 342 Phase 2 eligible 0 No 8 1 Yes 971 8 Unknown 0 9 Missing 0 Sysmiss 342 variable: ph2elig (table[s]: arkk_fieldlog, arkl_fieldlog) Phase 2 complete 979 342 Phase 2 complete 0 No 9 1 Yes 970 8 Unknown 0 9 Missing 0 Sysmiss 342 variable: ph2complete (table[s]: arkk_fieldlog, arkl_fieldlog) APBN given 979 342 APBN given 0 No 843 1 Yes 136 8 Unknown 0 9 Missing 0 Sysmiss 342 variable: apbn (table[s]: arkk_fieldlog, arkl_fieldlog) Urine taken at 24 hrs 979 342 Urine taken at 24 hrs 0 No 972 1 Yes 7 8 Unknown 0 9 Missing 0 Sysmiss 342 variable: urine24 (table[s]: arkk_fieldlog, arkl_fieldlog) 979 0 Phase 2 staffcode variable: ph2rcdr (table[s]: arkk_fieldlog, arkl_fieldlog) Comments 601 0 Comments variable: comments (table[s]: arkk_fieldlog, arkl_fieldlog) if field-log missing (D) 10 1311 if field-log missing this is added manually for people known to have missing fieldlogs Sex (S) Sex 1163 158 Sex 0 Male 552 1 Female 611 8 Unknown 0 9 Missing 0 Sysmiss 158 variable: sex (table[s]:genl_identity, gen_identity_clean [derived table]) participant age in years (D) 1047 274 gen age=int((intdate-birth_date)/365.25) if intdate~=. & birth_date~=. result of merging sex & dob to main data (D) 1321 0 0 Not available 670 1 Available 651 this variable is created during the merge of id (sex & birth date) data to the main dataset and then is recoded to be binary available/not available. Interview date (S) Date completed 1058 variable: intdate (table[s]: arkk_consent, arkl_consent) 1058 263 Read info sheet 0 No 6 1 Yes 1052 8 Unknown 0 9 Missing 0 Sysmiss 263 I agree to take part in this study and to answer questions about my health and lifestyle. I also agree to have my weight, height, waist and hip size, blood pressure, pulse, and bio-impedance measured. I also agree to have an ECG reading. 1052 269 0 No 22 1 Yes 1030 8 Unknown 0 9 Missing 0 Sysmiss 269 variable: consenta (table[s]: arkk_consent, arkl_consent)v Consent to participate withdrawn (D) 4 1317 1 4 Sysmiss 1317 this is added manually for people known to have withdrawn this consent Consent to give blood (S) 1030 291 0 No 0 1 Yes 1030 8 Unknown 0 9 Missing 0 Sysmiss 291 variable: consentc (table[s]: arkk_consent, arkl_consent) Consent to give blood withdrawn (S) 27 1294 1 27 Sysmiss 1294 Consent to be tested for HIV (S) I agree to be tested for HIV. If I am found to be HIV positive, I will be ask to repeat the test at the nearest health centre. 1030 291 0 No 148 1 Yes 855 8 Unknown 27 9 Missing 0 Sysmiss 291 variable: consentd (table[s]: arkk_consent, arkl_consent) Consent to be tested for HIV withdrawn (D) 84 1237 Consent to be tested for HIV withdrawn 1 84 Sysmiss 1237 this is added manually for people known to have withdrawn this consent 1030 291 Consent to blood storage 0 No 2 1 Yes 1028 8 Unknown 0 9 Missing 0 Sysmiss 291 variable: consente (table[s]: arkk_consent, arkl_consent) Consent to iohexol injection (S) 1030 291 0 No 0 1 Yes 1030 7 Not applicable 0 8 Unknown 0 9 Missing 0 Sysmiss 291 variable: consentf (table[s]: arkk_consent, arkl_consent) Consent to iohexol injection withdrawn (D) 28 1293 Consent to iohexol injection withdrawn 1 28 Sysmiss 1293 this is added manually for people known to have withdrawn this consent Consent to BP monitoring (S) I agree to wear the machine that will measure my blood pressure for a period of 24 hours and will not take it off or expose it to water. 1030 291 Consent to BP monitoring 0 No 75 1 Yes 792 7 Not applicable 163 8 Unknown 0 9 Missing 0 Sysmiss 291 variable: consentg (table[s]: arkk_consent, arkl_consent) I agree to collect all the urine that I will pass in the period of 24hours into the container that will be provided. 1030 291 Consent to collect urine 0 No 50 1 Yes 604 7 Not applicable 376 8 Unknown 0 9 Missing 0 Sysmiss 291 variable: consenth (table[s]: arkk_consent, arkl_consent) I understand that the information I provide may be used in publications, reports, web pages, and other research outputs in an anonymised form. 1030 291 Consent to share data 0 No 0 1 Yes 1030 8 Unknown 0 9 Missing 0 Sysmiss 291 variable: consenti (table[s]: arkk_consent, arkl_consent) I would like to be told the results of my blood tests if they show signs of kidney disease. 1029 292 Would like results 0 No 0 1 Yes 1029 8 Unknown 0 9 Missing 0 Sysmiss 292 variable: disclosure (table[s]: arkk_consent, arkl_consent) if consent data is missing (D) 1 1320 if consent data is missing 1 1 Sysmiss 1320 this is added manually for people known to have missing consent form consent data availability (D) 1321 0 consent data availability 0 Not available 263 1 Available 1058 this variable is created during the merge of consent data to the main dataset and then is recoded to be binary available/not available. How old are you? (S) How old are you? 1025 296 How old are you? variable: ageyear (table[s]: arkk_arkq, arkl_arkq) What is your ethnic group/racial group/cultural subgroup background? (S) What is your ethnicity? 1026 295 1 Chewa 188 2 Tumbuka 412 3 Ngoni 109 4 Yao 42 5 Lomwe 68 6 Nkhonde 48 7 Refused 0 8 Other 158 98 Unknown 1 Sysmiss 295 variable: ethnic (table[s]: arkk_arkq, arkl_arkq) Ethnicity, other, SPECIFY (S) Ethnicity, other, SPECIFY 158 0 variable: ethnicoth (table[s]: arkk_arkq, arkl_arkq) Are you in fulltime education? 1026 295 Are you in fulltime education? 0 No 917 1 Yes 109 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: educft (table[s]: arkk_arkq, arkl_arkq) Highest level of education (S) Highest level of education 1026 295 0 Illiterate, no formal education 53 1 Literate, no formal education 5 2 Standard 1-5, illiterate 93 3 Standard 1-5, literate 108 4 Standard 6-8 374 5 Secondary 306 6 Tertiary 87 9 Missing 0 Sysmiss 295 variable: educat (table[s]: arkk_arkq, arkl_arkq) Subsistence farming (S) Subsistence farming 917 404 0 No 454 1 Yes 463 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incsub (table[s]: arkk_arkq, arkl_arkq) Commercial farming (S) Commercial farming 917 404 0 No 528 1 Yes 389 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: inccomfarm (table[s]: arkk_arkq, arkl_arkq) Wage employment (S) Wage employment 917 404 Wage employment 0 No 739 1 Yes 178 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incwage (table[s]: arkk_arkq, arkl_arkq) Non-agricultural enterprises (S) Non-agricultural enterprises 917 404 Non-agricultural enterprises 0 No 737 1 Yes 180 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incnonagric (table[s]: arkk_arkq, arkl_arkq) Property income (S) Property income 917 404 Property income 0 No 764 1 Yes 153 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incprop (table[s]: arkk_arkq, arkl_arkq) Transfers (pension, allowances, social security benefits etc) (S) Transfers (pension, allowances, social security benefits etc) 917 404 0 No 852 1 Yes 65 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: inctransfer (table[s]: arkk_arkq, arkl_arkq) Remittances (S) Remittances 917 404 Remittances 0 No 805 1 Yes 112 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incremit (table[s]: arkk_arkq, arkl_arkq) Organisational support (food aid, WFP, NGO etc) (S) Organisational support (food aid, WFP, NGO etc) 917 404 0 No 833 1 Yes 84 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incsupp (table[s]: arkk_arkq, arkl_arkq) Other (S) Income source: Other. 917 404 Other 0 No 881 1 Yes 36 8 Unknown 0 9 Missing 0 Sysmiss 404 variable: incoth (table[s]: arkk_arkq, arkl_arkq) Other source of income, specify. (S) Other source of income, specify. 36 0 variable: incothdet (table[s]: arkk_arkq, arkl_arkq) Have you ever been married? (S) Have you ever been married, that is, have you ever had someone you called your wife/husband ? 1026 295 0 No 54 1 Yes 972 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: evermar (table[s]: arkk_arkq, arkl_arkq) How old were you when you first got married? (S) How old were you when you first got married? 970 351 How old were you when you first got married? variable: agefirstmar (table[s]: arkk_arkq, arkl_arkq) Have you ever been pregnant ? 547 774 0 No 29 1 Yes 518 8 Unknown 0 9 Missing 0 Sysmiss 774 variable: everpreg (table[s]: arkk_arkq, arkl_arkq) In the past 12 months, have you become pregnant? 201 1120 In the past 12 months, have you become pregnant? 0 No 194 1 Yes 7 8 Unknown 0 9 Missing 0 Sysmiss 1120 variable: pregm12 (table[s]: arkk_arkq, arkl_arkq) Did you attend antenatal clinic? 7 1314 0 No 2 1 Yes 5 8 Unknown 0 9 Missing 0 Sysmiss 1314 variable: ancuse (table[s]: arkk_arkq, arkl_arkq) Have you ever had high blood pressure in pregnancy? (S) Have you ever had high blood pressure in pregnancy? 201 1120 0 No 186 1 Yes 15 8 Unknown 0 9 Missing 0 Sysmiss 1120 variable: preghighbp (table[s]: arkk_arkq, arkl_arkq) Have you ever had diabetes in pregnancy? 201 1120 0 No 198 1 Yes 3 8 Unknown 0 9 Missing 0 Sysmiss 1120 variable: pregdiab (table[s]: arkk_arkq, arkl_arkq) Have you ever had diabetes in pregnancy? 201 1120 0 No 150 1 Yes 51 8 Unknown 0 9 Missing 0 Sysmiss 1120 variable: termina (table[s]: arkk_arkq, arkl_arkq) Do you currently smoke any tobacco products? (S) Do you currently smoke any tobacco products, such as cigarettes, cigars or pipes? 1026 295 0 No 935 1 Yes 91 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: cursmoke (table[s]: arkk_arkq, arkl_arkq) Do you currently smoke tobacco products daily? 91 1230 Do you currently smoke tobacco products daily? 0 No 38 1 Yes 53 8 Unknown 0 9 Missing 0 Sysmiss 1230 variable: cursmoked (table[s]: arkk_arkq, arkl_arkq) Have you ever smoked cigarettes regularly (i.e at least weekly)? (S) In the past, did you ever smoke daily? 973 348 Have you ever smoked cigarettes regularly (i.e at least weekly)? 0 No 889 1 Yes 84 8 Unknown 0 9 Missing 0 Sysmiss 348 variable: eversmoked (table[s]: arkk_arkq, arkl_arkq) How old were you when you started smocking (S) How old were you when you first started smoking daily? 156 1165 variable: agesmoke (table[s]: arkk_arkq, arkl_arkq) How long ago did you stop smoking daily? (S) How long ago did you stop smoking daily? 84 1237 1 Less than 4 weeks ago 0 2 More than 1 month but less than 12 month ago 5 3 More than one year but less than 5 years ago 17 4 More than 5 years ago 61 98 Unknown 1 Sysmiss 1237 variable: stopsmoked (table[s]: arkk_arkq, arkl_arkq) Do you commonly chew any tobacco products? (S) Do you commonly chew any tobacco products? 1026 295 0 No 1015 1 Yes 11 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: othtobyn (table[s]: arkk_arkq, arkl_arkq) How frequently do you chew tobacco? (S) How frequently do you chew tobacco? 11 1310 How frequently do you chew tobacco? 1 Daily 9 2 2-3x per week 1 3 Once a week 1 4 Once a month 0 Sysmiss 1310 variable: othtobfreq (table[s]: arkk_arkq, arkl_arkq) Have you ever consumed alcohol (S) Have you ever consumed an alcoholic drink such as beer, wine, spirits, fermented cider or local products? 1026 295 Have you ever consumed alcohol 0 No 664 1 Yes 362 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: everalcohol (table[s]: arkk_arkq, arkl_arkq) Have you consumed an alcoholic drink within the past 12 months? 362 959 0 No 185 1 Yes 177 8 Unknown 0 9 Missing 0 Sysmiss 959 variable: alcoholm12 (table[s]: arkk_arkq, arkl_arkq) In the past 12 mths, how freq have you had at least one alcoholic drink? (S) During the past 12 months, how frequently have you had at least one alcoholic drink? 177 1144 1 Daily 11 2 5-6 days per week 15 3 3-4 days per week 55 4 1-2 days per week 55 5 1-3 days per month 41 6 Less than once a month 0 7 Not at all 0 10 Refused 0 Sysmiss 1144 variable: alcohol12ml (table[s]: arkk_arkq, arkl_arkq) Have you consumed an alcoholic drink within the past 30 days? (S) Have you consumed an alcoholic drink within the past 30 days? 177 1144 Have you consumed an alcoholic drink within the past 30 days? 0 No 60 1 Yes 117 8 Unknown 0 9 Missing 0 Sysmiss 1144 variable: alcohold30 (table[s]: arkk_arkq, arkl_arkq) In the past 30 days, how often did you have at least one alcoholic drink? (S) During the past 30 days, on how many occasions did you have at least one alcoholic drink? 117 1204 variable: alcohold30l (table[s]: arkk_arkq, arkl_arkq) When was the last time you had an alcoholic drink? (S) When was the last time you had an alcoholic drink? 177 1144 1 Today 5 2 Yesterday 43 3 Between 3 and 7 days ago 55 4 Between 8 and 30 days ago 33 5 over 30 days ago 41 Sysmiss 1144 variable: alcoholwhen (table[s]: arkk_arkq, arkl_arkq) Does your work involve activity that causes large increases in breathing or heart rate like carrying or lifting heavy loads, very brisk walking, digging or construction work for at least 10 minutes continuously? 1026 295 0 No 736 1 Yes 290 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: vigwork (table[s]: arkk_arkq, arkl_arkq) In a typical week, on how many days do you do these activities? (S) In a typical week, on how many days do you do these activities as part of your work? 290 1031 In a typical week, on how many days do you do these activities? variable: vigworkwk (table[s]: arkk_arkq, arkl_arkq) Hours: (S) How much time do you spend doing these activities at work on a typical day? : Hours 290 1031 variable: vigworkhrs (table[s]: arkk_arkq, arkl_arkq) Minutes: (S) How much time do you spend doing these activities at work on a typical day? : Minutes 290 1031 variable: vigworkmins (table[s]: arkk_arkq, arkl_arkq) How many times each week do you eat fresh fruit or uncooked vegetable? (S) How many times each week do you eat fresh fruit or uncooked vegetable? 1026 295 How many times each week do you eat fresh fruit or uncooked vegetable? variable: fruitvegfreq (table[s]: arkk_arkq, arkl_arkq) How often do you add salt to your food? (S) How often do you add salt to your food? 1026 295 1 Rarely (<1x/wk) 780 2 125 3 Often (almost daily) 81 4 40 Sysmiss 295 variable: saltfreq (table[s]: arkk_arkq, arkl_arkq) How much water do you drink in a day? (S) How much water do you drink in a day? 1026 295 1 <=1L 195 2 1-2L 619 3 2-3L 163 4 3-4L 19 5 4-5L 15 6 >=5L 3 98 Unknown 12 Sysmiss 295 variable: waterfreq (table[s]: arkk_arkq, arkl_arkq) Diabetes (S) Does any family member (parents, siblings, or children) ever had or currently have any of the following diseases? : Diabetes 1026 295 Diabetes 0 No 829 1 Yes 152 8 Unknown 45 9 Missing 0 Sysmiss 295 variable: famdia (table[s]: arkk_arkq, arkl_arkq) Hypertension (S) Does any family member (parents, siblings, or children) ever had or currently have any of the following diseases? : Hypertension 1026 295 Hypertension 0 No 561 1 Yes 425 8 Unknown 40 9 Missing 0 Sysmiss 295 variable: fambp (table[s]: arkk_arkq, arkl_arkq) Heart disease (S) Does any family member (parents, siblings, or children) ever had or currently have any of the following diseases? : Heart disease 1026 295 Heart disease 0 No 858 1 Yes 113 8 Unknown 55 9 Missing 0 Sysmiss 295 variable: famheart (table[s]: arkk_arkq, arkl_arkq) Dyslipidaemia (S) Does any family member (parents, siblings, or children) ever had or currently have any of the following diseases? : Dyslipidaemia 1026 295 Dyslipidaemia 0 No 884 1 Yes 46 8 Unknown 96 9 Missing 0 Sysmiss 295 variable: famd (table[s]: arkk_arkq, arkl_arkq) Does any family member (parents, siblings, or children) ever had or currently have any of the following diseases? : Chronic Kidney disease 1026 295 Chronic Kidney disease 0 No 899 1 Yes 24 8 Unknown 103 9 Missing 0 Sysmiss 295 variable: famckd (table[s]: arkk_arkq, arkl_arkq) Have you ever had your blood pressure measured by a health worker? (S) Have you ever had your blood pressure measured by a doctor or other health worker? 1026 295 Have you ever had your blood pressure measured by a health worker? 0 No 60 1 Yes 966 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: everbp (table[s]: arkk_arkq, arkl_arkq) ever been told by a health worker that you have raised blood pressure? (S) Have you ever been told by a doctor or other health worker that you have raised blood pressure or hypertension? 1026 295 ever been told by a health worker that you have raised blood pressure? 0 No 714 1 Yes 312 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: diabhyp (table[s]: arkk_arkq, arkl_arkq) 311 1010 0 No 115 1 Yes 196 8 Unknown 0 9 Missing 0 Sysmiss 1010 variable: hbp3lessyr (table[s]: arkk_arkq, arkl_arkq) How long have you had raised blood pressure or hypertension? 115 1206 variable: hbp3 (table[s]: arkk_arkq, arkl_arkq) been told in the past 12 mths that you have raised blood pressure? (S) Have you been told in the past 12 months that you have raised blood pressure or hypertension? 44 1277 been told in the past 12 mths that you have raised blood pressure? 0 No 14 1 Yes 30 8 Unknown 0 9 Missing 0 Sysmiss 1277 variable: diabhypm12 (table[s]: arkk_arkq, arkl_arkq) In the past two weeks, have you been treated for raised BP with drugs? (S) 312 1009 In the past two weeks, have you been treated for raised BP with drugs? 0 No 146 1 Yes 166 8 Unknown 0 9 Missing 0 Sysmiss 1009 variable: remdbpw2 (table[s]: arkk_arkq, arkl_arkq) Have you ever had your blood sugar measured by a health worker? (S) Have you ever had your blood sugar measured by a doctor or other health worker? 1026 295 Have you ever had your blood sugar measured by a health worker? 0 No 129 1 Yes 897 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: everbsug (table[s]: arkk_arkq, arkl_arkq) ever been told by a health worker that you have raised blood sugar? (S) Have you ever been told by a doctor or other health worker that you have raised blood sugar or diabetes? 1026 295 ever been told by a health worker that you have raised blood sugar? 0 No 963 1 Yes 63 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: diabsug (table[s]: arkk_arkq, arkl_arkq) 63 1258 0 No 25 1 Yes 38 8 Unknown 0 9 Missing 0 Sysmiss 1258 variable: hd3lessyr (table[s]: arkk_arkq, arkl_arkq) How long have you had raised blood sugar? 25 1296 variable: hd3 (table[s]: arkk_arkq, arkl_arkq) been told in the past 12 months that you have raised blood sugar? (S) Have you been told in the past 12 months that you have raised blood sugar or diabetes? 4 1317 been told in the past 12 months that you have raised blood sugar? 0 No 0 1 Yes 4 8 Unknown 0 9 Missing 0 Sysmiss 1317 variable: diabsupm12 (table[s]: arkk_arkq, arkl_arkq) Today have you taken insulin or other drugs for raised blood sugar? (S) Today, have you taken insulin or other drugs/medication that have been prescribed by a doctor or other health worker for raised blood sugar? 63 1258 Today have you taken insulin or other drugs for raised blood sugar? 0 No 22 1 Yes 41 8 Unknown 0 9 Missing 0 Sysmiss 1258 variable: remddiabnow (table[s]: arkk_arkq, arkl_arkq) ever had your cholesterol measured (by blood test) by a health worker? (S) Have you ever had your cholesterol measured (by blood test) by a doctor or other health worker? 1026 295 ever had your cholesterol measured (by blood test) by a health worker? 0 No 199 1 Yes 827 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: everchole (table[s]: arkk_arkq, arkl_arkq) Have you ever been told by a health worker that you have high cholesterol? (S) Have you ever been told by a doctor or other health worker that you have high cholesterol? 1026 295 Have you ever been told by a health worker that you have high cholesterol? 0 No 992 1 Yes 34 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: diachole (table[s]: arkk_arkq, arkl_arkq) Have you been told in the past 12 months that you have high cholesterol? (S) Have you been told in the past 12 months that you have high cholesterol? 34 1287 Have you been told in the past 12 months that you have high cholesterol? 0 No 13 1 Yes 21 8 Unknown 0 9 Missing 0 Sysmiss 1287 variable: diacholem12 (table[s]: arkk_arkq, arkl_arkq) In the past 2 wks, have you been treated for high cholesterol with drugs? (S) During the past two weeks, have you been treated for high cholesterol with drugs/medication prescribed by a doctor or other health worker? 34 1287 In the past 2 wks, have you been treated for high cholesterol with drugs? 0 No 33 1 Yes 1 8 Unknown 0 9 Missing 0 Sysmiss 1287 variable: remdchow2 (table[s]: arkk_arkq, arkl_arkq) Have you ever suffered from Loin pain? (S) Have you ever suffered from Loin pain? 1026 295 Have you ever suffered from Loin pain? 0 No 603 1 Yes 423 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: everloinp (table[s]: arkk_arkq, arkl_arkq) Have you ever had repeated episodes of urinary tract infection? (S) Have you ever had repeated episodes of urinary tract infection? 1026 295 Have you ever had repeated episodes of urinary tract infection? 0 No 835 1 Yes 191 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: everuti (table[s]: arkk_arkq, arkl_arkq) ever been diagnosed with kidney disease by a health professional? (S) Have you ever been told by a doctor or other health worker that you have Kidney disease? 1026 295 ever been diagnosed with kidney disease by a health professional? 0 No 1016 1 Yes 10 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: diakid (table[s]: arkk_arkq, arkl_arkq) 10 1311 0 No 4 1 Yes 6 8 Unknown 0 9 Missing 0 Sysmiss 1311 variable: hckdlessyr (table[s]: arkk_arkq, arkl_arkq) 4 1317 variable: hckd (table[s]: arkk_arkq, arkl_arkq) Have you been told in the past 12 months that you have Kidney Disease? (S) Have you been told in the past 12 months that you have Kidney Disease? 0 1321 Have you been told in the past 12 months that you have Kidney Disease? 0 No 0 1 Yes 0 8 Unknown 0 9 Missing 0 Sysmiss 1321 variable: diakdm12 (table[s]: arkk_arkq, arkl_arkq) Today, have you taken drugs for Kidney disease? (S) Today, have you taken drugs/medication that have been prescribed by a doctor or other health worker for Kidney disease? 10 1311 0 No 10 1 Yes 0 8 Unknown 0 9 Missing 0 Sysmiss 1311 variable: remkdwnow (table[s]: arkk_arkq, arkl_arkq) Have you ever taken traditional medicine? (S) Have you ever taken traditional medicine for any medical condition or for any other reasons including cultural rituals? 1026 295 Have you ever taken traditional medicine? 0 No 302 1 Yes 724 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: tradmed (table[s]: arkk_arkq, arkl_arkq) Have you taken in the last 12 months traditional medicine? (S) Have you taken in the last 12 months traditional medicine for any medical condition or for any other reasons including cultural rituals? 724 597 0 No 516 1 Yes 208 8 Unknown 0 9 Missing 0 Sysmiss 597 variable: tradmedm12 (table[s]: arkk_arkq, arkl_arkq) When did you last take traditional medicine? (S) When did you last take traditional medicine for any medical condition or for any other reasons including cultural rituals? 208 1113 When did you last take traditional medicine? 0 More than one month 97 1 Within last one month 58 2 Within last one week 43 3 Within less than one week 2 98 Unknown 8 Sysmiss 1113 variable: tradmedlast (table[s]: arkk_arkq, arkl_arkq) Have you ever taken treatment for any chronic disease 1026 295 Have you ever taken treatment for any chronic disease 0 No 730 1 Yes 296 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: trt (table[s]: arkk_arkq, arkl_arkq) Taken treatment for diabetes (S) For what disease was it? : Diabetes 296 1025 Taken treatment for diabetes 0 No 246 1 Yes 50 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remddiab (table[s]: arkk_arkq, arkl_arkq) Taken treatment for high blood pressure (S) For what disease was it? : High Blood pressure 296 1025 Taken treatment for high blood pressure 0 No 105 1 Yes 191 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdbp (table[s]: arkk_arkq, arkl_arkq) Taken treatment for chronic Kidney disease (S) For what disease was it? : Chronic Kidney disease 296 1025 0 No 294 1 Yes 2 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdckd (table[s]: arkk_arkq, arkl_arkq) Taken treatment for TB (S) For what disease was it? : Tuberculosis 296 1025 0 No 285 1 Yes 11 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdtb (table[s]: arkk_arkq, arkl_arkq) Taken treatment for heart disease (S) For what disease was it? : Heart disease 296 1025 0 No 292 1 Yes 4 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdheart (table[s]: arkk_arkq, arkl_arkq) Taken treatment for cancer (S) For what disease was it? : Cancer 296 1025 0 No 294 1 Yes 2 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdcancer (table[s]: arkk_arkq, arkl_arkq) Taken treatment for back pain (S) For what disease was it? : Back pain. 296 1025 Taken treatment for back pain 0 No 285 1 Yes 11 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdbackp (table[s]: arkk_arkq, arkl_arkq) Taken treatment for other (S) For what disease was it? : Other . 296 1025 0 No 199 1 Yes 97 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: remdother (table[s]: arkk_arkq, arkl_arkq) 97 0 variable: remdothertxt (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for diabetes (S) 50 1271 How long did you take treatment for diabetes 1 less than 1 week 4 2 1-4 weeks 1 3 one month 4 4 2-6 months 41 5 7-12 months 0 6 more than 12 months 0 Sysmiss 1271 variable: remddiabl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for high Blood pressure (S) 191 1130 1 less than 1 week 8 2 1-4 weeks 3 3 one month 6 4 2-6 months 171 5 7-12 months 0 6 more than 12 months 3 Sysmiss 1130 variable: remdbpl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for chronic Kidney disease (S) 2 1319 How long did you take treatment for chronic Kidney disease 1 less than 1 week 1 2 1-4 weeks 1 3 one month 0 4 2-6 months 0 5 7-12 months 0 6 more than 12 months 0 Sysmiss 1319 variable: remdckdl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for TB (S) 11 1310 How long did you take treatment for TB 1 less than 1 week 0 2 1-4 weeks 6 3 one month 3 4 2-6 months 2 5 7-12 months 0 6 more than 12 months 0 Sysmiss 1310 variable: remdtbl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for heart disease (S) 4 1317 How long did you take treatment for heart disease 1 less than 1 week 1 2 1-4 weeks 0 3 one month 0 4 2-6 months 3 5 7-12 months 0 6 more than 12 months 0 Sysmiss 1317 variable: remdheartl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for cancer (S) 2 1319 1 less than 1 week 0 2 1-4 weeks 1 3 one month 0 4 2-6 months 1 5 7-12 months 0 6 more than 12 months 0 Sysmiss 1319 variable: remdcancerl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for back pain (S) 11 1310 How long did you take treatment for back pain 1 less than 1 week 7 2 1-4 weeks 0 3 one month 0 4 2-6 months 0 5 7-12 months 2 6 more than 12 months 2 Sysmiss 1310 variable: remdbackpl (table[s]: arkk_arkq, arkl_arkq) How long did you take treatment for other (S) 90 1231 1 less than 1 week 1 2 1-4 weeks 3 3 one month 3 4 2-6 months 81 5 7-12 months 1 6 more than 12 months 1 Sysmiss 1231 variable: remdotherl (table[s]: arkk_arkq, arkl_arkq) For the previous disease(s) , are you still taking the treatment? 0 1321 For the previous disease(s) , are you still taking the treatment? 0 No 0 1 Yes 0 8 Unknown 0 9 Missing 0 Sysmiss 1321 variable: tmtcur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for diabetes (S) 50 1271 Currently taking treatment for diabetes 0 No 5 1 Yes 45 8 Unknown 0 9 Missing 0 Sysmiss 1271 variable: remddiabcur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for high Blood pressure (S) 191 1130 Currently taking treatment for high Blood pressure 0 No 27 1 Yes 164 8 Unknown 0 9 Missing 0 Sysmiss 1130 variable: remdbpcur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for chronic Kidney disease (S) 2 1319 Currently taking treatment for chronic Kidney disease 0 No 2 1 Yes 0 8 Unknown 0 9 Missing 0 Sysmiss 1319 variable: remdckdcur (table[s]: arkk_arkq, arkl_arkq) 11 1310 0 No 9 1 Yes 2 8 Unknown 0 9 Missing 0 Sysmiss 1310 variable: remdtbcur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for heart disease (S) 4 1317 Currently taking treatment for heart disease 0 No 1 1 Yes 3 8 Unknown 0 9 Missing 0 Sysmiss 1317 variable: remdheartcur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for cancer (S) 2 1319 Currently taking treatment for cancer 0 No 1 1 Yes 1 8 Unknown 0 9 Missing 0 Sysmiss 1319 variable: remdcancercur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for back pain (S) 11 1310 Currently taking treatment for back pain 0 No 7 1 Yes 4 8 Unknown 0 9 Missing 0 Sysmiss 1310 variable: remdbackpcur (table[s]: arkk_arkq, arkl_arkq) Currently taking treatment for other (S) 90 1231 Currently taking treatment for other 0 No 6 1 Yes 84 8 Unknown 0 9 Missing 0 Sysmiss 1231 variable: remdothercur (table[s]: arkk_arkq, arkl_arkq) Are you currently taking any pain killers? (S) Are you currently taking any pain killers? 296 1025 Are you currently taking any pain killers? 0 No 206 1 Yes 90 8 Unknown 0 9 Missing 0 Sysmiss 1025 variable: painkcur (table[s]: arkk_arkq, arkl_arkq) How long have you been taking the pain killers? (S) How long have you been taking the pain killers? 90 1231 How long have you been taking the pain killers? 1 less than 1 week 11 2 1-4 weeks 2 3 one month 4 4 2-6 months 46 5 7-12 months 17 6 more than 12 months 10 Sysmiss 1231 variable: painkl (table[s]: arkk_arkq, arkl_arkq) ACE/ARB Enalpril, Captopril, Lisonopril or Lorsartan/Ibersatan 282 1039 ACE/ARB Enalpril, Captopril, Lisonopril or Lorsartan/Ibersatan 0 No 247 1 Yes 35 8 Unknown 0 9 Missing 0 Sysmiss 1039 variable: medace (table[s]: arkk_arkq, arkl_arkq) Beta blockers eg propranolol; atenolol, carvedilol, bisoprolol (S) Beta blockers eg propranolol; atenolol, carvedilol, bisoprolol 277 1044 Beta blockers eg propranolol; atenolol, carvedilol, bisoprolol 0 No 250 1 Yes 27 8 Unknown 0 9 Missing 0 Sysmiss 1044 variable: medbeta (table[s]: arkk_arkq, arkl_arkq) Calcium channel blocker eg Nifedipine/ Amilodipine/Adalat XL (S) Calcium channel blocker eg Nifedipine/ Amilodipine/Adalat XL 279 1042 Calcium channel blocker eg Nifedipine/ Amilodipine/Adalat XL 0 No 212 1 Yes 67 8 Unknown 0 9 Missing 0 Sysmiss 1042 variable: medcalc (table[s]: arkk_arkq, arkl_arkq) Diuretics; Bendrofluazide/ Hydrochlorothalidone Lasix/ other diuretic (S) Diuretics; Bendrofluazide/ Hydrochlorothalidone Lasix/ other diuretic 286 1035 Diuretics; Bendrofluazide/ Hydrochlorothalidone Lasix/ other diuretic 0 No 191 1 Yes 95 8 Unknown 0 9 Missing 0 Sysmiss 1035 variable: meddiur (table[s]: arkk_arkq, arkl_arkq) NSAIDS, asprin, diclofenac, ibubrofen, aceclofenac (S) NSAIDS, asprin, diclofenac, ibubrofen, aceclofenac 282 1039 NSAIDS, asprin, diclofenac, ibubrofen, aceclofenac 0 No 214 1 Yes 68 8 Unknown 0 9 Missing 0 Sysmiss 1039 variable: mednsaids (table[s]: arkk_arkq, arkl_arkq) Gentamycin, other antibiotics (S) Gentamycin, other antibiotics 279 1042 Gentamycin, other antibiotics 0 No 275 1 Yes 4 8 Unknown 0 9 Missing 0 Sysmiss 1042 variable: medantibs (table[s]: arkk_arkq, arkl_arkq) Other (S) 282 1039 Other 0 No 192 1 Yes 90 8 Unknown 0 9 Missing 0 Sysmiss 1039 variable: medoth (table[s]: arkk_arkq, arkl_arkq) 90 0 variable: medothdet (table[s]: arkk_arkq, arkl_arkq) Do you have any medical complaint at the moment? 1026 295 Do you have any medical complaint at the moment? 0 No 588 1 Yes 438 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: currail (table[s]: arkk_arkq, arkl_arkq) Mid-upper arm circumference (S) Arm circumference (cm) 1026 295 Mid-upper arm circumference variable: muac (table[s]: arkk_arkq, arkl_arkq) Blood pressure measured on right arm (S) Blood pressure measured on right arm 1026 295 Blood pressure measured on right arm 0 No 7 1 Yes 1019 8 Unknown 0 9 Missing 0 Sysmiss 295 variable: bparmr (table[s]: arkk_arkq, arkl_arkq) Reason for using left arm (S) If it is not possible to use the right arm and the left arm is used, state reason 7 0 Reason for using left arm variable: bparmrwhy (table[s]: arkk_arkq, arkl_arkq) 1st systolic 1026 295 95 220 135.315 21.96 variable: sysbpf (table[s]: arkk_arkq, arkl_arkq) 1026 295 86 213 131.889 20.781 variable: sysbps (table[s]: arkk_arkq, arkl_arkq) 1026 295 84 207 130.499 20.782 variable: sysbpt (table[s]: arkk_arkq, arkl_arkq) 1st diastolic 1026 295 45 132 80.456 11.851 variable: diabpf (table[s]: arkk_arkq, arkl_arkq) 1026 295 49 130 79.5 11.768 variable: diabps (table[s]: arkk_arkq, arkl_arkq) 1026 295 43 129 78.745 11.638 variable: diabpt (table[s]: arkk_arkq, arkl_arkq) Referral slip given for high blood pressure? (S) Referral slip given for high blood pressure? 310 1011 0 No 3 1 Yes 307 8 Unknown 0 9 Missing 0 Sysmiss 1011 variable: refbp (table[s]: arkk_arkq, arkl_arkq) Why did you not give a referral slip (S) Why did you not give a referral slip 3 0 Why did you not give a referral slip variable: refbpno (table[s]: arkk_arkq, arkl_arkq) 1st pulse 1026 295 38 136 74.84 13.151 1st pulse variable: pulsef (table[s]: arkk_arkq, arkl_arkq) 1026 295 37 180 74.578 13.324 variable: pulse2 (table[s]: arkk_arkq, arkl_arkq) 1026 295 38 142 74.336 12.583 variable: pulse3 (table[s]: arkk_arkq, arkl_arkq) Time blood pressure taken: (S) Time blood pressure taken: 1026 295 variable: bptime (table[s]: arkk_arkq, arkl_arkq) Height (cm) (S) Height (cm) 1026 295 135 190 160.247 7.956 Height (cm) variable: height (table[s]: arkk_arkq, arkl_arkq) Height comment 337 0 variable: heightcom (table[s]: arkk_arkq, arkl_arkq) Weight (kg) (S) weight 1026 295 33.4 135 64.232 13.874 variable: weight (table[s]: arkk_arkq, arkl_arkq) 1st measure of waist circumference (cm) 1026 295 26 146 83.985 12.221 variable: waiscf (table[s]: arkk_arkq, arkl_arkq) 2nd measure of waist circumference (cm) 1026 295 26 146 83.977 12.217 variable: waiscs (table[s]: arkk_arkq, arkl_arkq) 3rd measure of waist circumference (cm) 0 1321 variable: waisct (table[s]: arkk_arkq, arkl_arkq) 1st measure of hips circumference (cm) (S) 1st measure of hips circumference (cm) 1026 295 55.3 150 96.407 11.677 variable: hipcuf (table[s]: arkk_arkq, arkl_arkq) 2nd measure of hips circumference (cm) (S) 2nd measure of hips circumference (cm) 1026 295 55.3 150 96.404 11.682 2nd measure of hips circumference (cm) variable: hipcus (table[s]: arkk_arkq, arkl_arkq) 3rd measure of hips circumference (cm) (S) 3rd measure of hips circumference (cm) 0 1321 3rd measure of hips circumference (cm) variable: hipcut (table[s]: arkk_arkq, arkl_arkq) Device ID for BIA (S) Device ID for BIA 1026 295 Device ID for BIA variable: biadeid (table[s]: arkk_arkq, arkl_arkq) Other Device ID for BIA (S) Other Device ID for BIA 426 0 Other Device ID for BIA variable: biadeidoth (table[s]: arkk_arkq, arkl_arkq) BIA Device make and model (50Hz supine) (S) BIA Device make and model (50Hz supine) 1026 0 variable: biadeev (table[s]: arkk_arkq, arkl_arkq) Other Device ID for BIA (S) Other Device ID for BIA 2 0 variable: biadeevoth (table[s]: arkk_arkq, arkl_arkq) Test Number (S) Test Number 1026 295 variable: biatestnum (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (fat mass) Kg 1026 295 variable: biofmassf (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (fat free mass/lean mass) Kg (S) Bioimpedance outputs (fat free mass/lean mass) Kg 1026 295 variable: bioffmassf (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (Dry lean mass) Kg (S) Bioimpedance outputs (Dry lean mass) Kg 1026 295 variable: biodlmassf (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (Total body water) Kg (S) Bioimpedance outputs (fat free mass/lean mass) Kg 1026 295 variable: biotwmassf (table[s]: arkk_arkq, arkl_arkq) Bioimpedence value (Ω) (S) Bioimpedence value (O) 1026 295 variable: biovalf (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (fat mass) Kg 1026 295 variable: biofmasss (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (fat free mass/lean mass) Kg (S) Bioimpedance outputs (fat free mass/lean mass) Kg 1026 295 variable: bioffmasss (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (Dry lean mass) Kg (S) Bioimpedance outputs (Dry lean mass) Kg 1026 295 variable: biodlmasss (table[s]: arkk_arkq, arkl_arkq) Bioimpedance outputs (Total body water) Kg (S) Bioimpedance outputs (Total body water) Kg 1026 295 variable: biotwmasss (table[s]: arkk_arkq, arkl_arkq) Bioimpedence value (Ω) (S) Bioimpedence value (O) 1026 295 variable: biovals (table[s]: arkk_arkq, arkl_arkq) questionnaire data availability (D) 1321 0 0 Not available 295 1 Available 1026 this variable is created during the merge of questionnaire data to the main dataset and then is recoded to be binary available/not available. urine electrolyte sample fasting status (D) 1002 319 urine electrolyte sample fasting status 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 245 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 319 variable: basefoll (table[s]: ser_specimen, lab_specimen) urine electrolyte sample date of collection (D) 1002 urine electrolyte sample date of collection variable: datecoll (table[s]: ser_specimen, lab_specimen) urine electrolyte result: sodium (D) 1001 320 variable: na_units (table[s]: ser_electrolytes, lab_electrolytes) urine electrolyte result: creatinine (D) 1000 321 variable: creat_units (table[s]: ser_electrolytes, lab_electrolytes) urine electrolyte result: urine albumin (D) 1002 319 variable: ualb_units (table[s]: ser_electrolytes, lab_electrolytes) urine electrolyte result data availability (D) 1321 0 urine electrolyte result data availability 0 Not available 319 1 Available 1002 this variable is created during the merge of urine electrolyte data to the main dataset and then is recoded to be binary available/not available. serum electrolyte sample fasting status (D) 1002 319 serum electrolyte sample fasting status 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 245 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 319 variable: basefoll (table[s]: ser_specimen, lab_specimen) serum electrolyte sample date of collection (D) 1002 serum electrolyte sample date of collection variable: datecoll (table[s]: ser_specimen, lab_specimen) serum electrolyte result: sodium (D) 1002 319 serum electrolyte result: sodium variable: na_units (table[s]: ser_electrolytes, lab_electrolytes) serum electrolyte result: potassium (D) 1002 319 variable: k_units (table[s]: ser_electrolytes, lab_electrolytes) serum electrolyte result: creatinine (D) 1002 319 variable: creat_units (table[s]: ser_electrolytes, lab_electrolytes) serum electrolyte result: urea (D) 886 435 variable: urea_units (table[s]: ser_electrolytes, lab_electrolytes) serum electrolyte result data availability (D) 1321 0 serum electrolyte result data availability 0 Not available 319 1 Available 1002 this variable is created during the merge of serum electrolyte data to the main dataset and then is recoded to be binary available/not available. full blood count sample fasting status (D) 1003 318 full blood count sample fasting status 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 245 107 Baseline 0 108 Baseline random 758 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 318 variable: basefoll (table[s]: ser_specimen, lab_specimen) full blood count sample date of collection (D) 1003 full blood count sample date of collection variable: datecoll (table[s]: ser_specimen, lab_specimen) full blood count result: white blood cell (S) 1003 318 variable: wbc (table[s]: ser_fbc, lab_fbc) full blood count result: red blood cell (S) 1003 318 full blood count result: red blood cell variable: rbc (table[s]: ser_fbc, lab_fbc) full blood count result: haemaglobin (S) 1003 318 full blood count result: haemaglobin variable: hgb (table[s]: ser_fbc, lab_fbc) 1003 318 variable: hct (table[s]: ser_fbc, lab_fbc) full blood count result: mean corpuscular volume (S) 1003 318 variable: mcv (table[s]: ser_fbc, lab_fbc) full blood count result: mean cell haemoglobin (S) 1003 318 full blood count result: mean cell haemoglobin variable: mch (table[s]: ser_fbc, lab_fbc) full blood count result: mean corpuscular haemoglobin concentration (S) 1003 318 variable: mchc (table[s]: ser_fbc, lab_fbc) full blood count result: platelets (S) 1003 318 full blood count result: platelets variable: plt (table[s]: ser_fbc, lab_fbc) full blood count result: neutrophils (S) 501 820 variable: ne (table[s]: ser_fbc, lab_fbc) full blood count result: lymphocyte percentage (S) 1003 318 variable: lymphper (table[s]: ser_fbc, lab_fbc) full blood count result: lymphocyte total (S) 1003 318 full blood count result: lymphocyte total variable: lymphtot (table[s]: ser_fbc, lab_fbc) full blood count result: neutrophil percentage (S) 411 910 full blood count result: neutrophil percentage variable: neutroper (table[s]: ser_fbc, lab_fbc) full blood count result: neutrophil total (S) 411 910 variable: neutronum (table[s]: ser_fbc, lab_fbc) full blood count result: monocytes (S) 501 820 variable: mo (table[s]: ser_fbc, lab_fbc) full blood count result: eosinophils (S) 501 820 variable: eo (table[s]: ser_fbc, lab_fbc) full blood count result: basophils (S) 501 820 variable: ba (table[s]: ser_fbc, lab_fbc) full blood count data availability (D) 1321 0 0 Not available 318 1 Available 1003 this variable is created during the merge of full blood count data to the main dataset and then is recoded to be binary available/not available. glucose sample fasting status (D) 1002 319 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 245 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 319 variable: basefoll (table[s]: ser_specimen, lab_specimen) glucose sample date of collection (D) 1002 glucose sample date of collection variable: datecoll (table[s]: ser_specimen, lab_specimen) glucose result (D) 1002 319 variable: gluc_units (table[s]: ser_glucose, lab_glucose) glucose test result data availability (D) 1321 0 glucose test result data availability 0 Not available 319 1 Available 1002 this variable is created during the merge of glucose data to the main dataset and then is recoded to be binary available/not available. hepatitis sample fasting status (D) 1001 320 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 244 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 320 variable: basefoll (table[s]: ser_specimen, lab_specimen) hepatitis sample date of collection (D) 1001 variable: datecoll (table[s]: ser_specimen, lab_specimen) hepatitis result: HBV (D) 1001 320 0 Negative 966 1 Positive 35 8 Unknown 0 9 Missing 0 Sysmiss 320 variable: hbv_testout (table[s]: ser_hepbhepc, lab_hepbhepc) hepatitis result: HBC (D) 1001 320 0 Negative 947 1 Positive 54 8 Unknown 0 9 Missing 0 Sysmiss 320 variable: hcv_testout (table[s]: ser_hepbhepc, lab_hepbhepc) hepatitis test result data availability (D) 1321 0 0 Not available 320 1 Available 1001 this variable is created during the merge of hepatitis data to the main dataset and then is recoded to be binary available/not available. malaria sample fasting status (D) 1000 321 malaria sample fasting status 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 244 107 Baseline 0 108 Baseline random 756 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 321 variable: basefoll (table[s]: ser_specimen, lab_specimen) malaria sample date of collection (D) 1000 malaria sample date of collection variable: datecoll (table[s]: ser_specimen, lab_specimen) malaria result (D) 1000 321 0 Negative 951 1 Positive 49 8 Unknown 0 9 Missing 0 Sysmiss 321 variable: result (table[s]: ser_malaria_rt, lab_malaria_rt) malaria test result data availability (D) 1321 0 malaria test result data availability 0 Not available 321 1 Available 1000 this variable is created during the merge of malaria data to the main dataset and then is recoded to be binary available/not available. HIV rapid test sample date of collection (D) 770 HIV rapid test sample date of collection variable: datecoll (table[s]: ser_specimen, lab_specimen) HIV rapid test result (D) 770 551 HIV rapid test result 0 Negative 753 1 Positive 17 2 Discrepancy 0 3 Invalid - 2 of 3 tests invalid 0 7 Not applicable 0 8 Unknown 0 9 Missing 0 Sysmiss 551 variable: rtsumm (table[s]: ser_rtr, lab_rtr) HIV rapid test result data availability (D) 1321 0 0 Not available 551 1 Available 770 this variable is created during the merge of HIV data to the main dataset and then is recoded to be binary available/not available. urinalysis sample fasting status (D) 1002 319 urinalysis sample fasting status 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 245 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 319 variable: basefoll (table[s]: ser_specimen, lab_specimen) urinalysis sample date of collection (D) 1002 variable: datecoll (table[s]: ser_specimen, lab_specimen) urinalysis result: glucose (D) 1002 319 0 Negative 956 1 100 mg/dL 12 2 250 mg/dL 4 3 500 mg/dL 5 4 1000 mg /dL 22 5 >2000 mg/dL 3 8 Unknown 0 9 Missing 0 Sysmiss 319 variable: glucose (table[s]: ser_urinalysis, lab_urinalysis) urinalysis result: gravity (D) 1002 319 1 1.000 11 2 1.005 32 3 1.010 175 4 1.015 227 5 1.020 163 6 1.025 145 7 1.030 249 8 Unknown 0 9 Missing 0 Sysmiss 319 variable: gravity (table[s]: ser_urinalysis, lab_urinalysis) urinalysis result: blood (D) 1002 319 0 Negative 821 1 Non-haemolysed trace 72 2 Non-haemolysed moderate 6 3 Haemolysed trace 27 4 Small(+) 19 5 Moderate(++) 22 6 Large(+++) 35 8 Unknown 0 9 Missing 0 Sysmiss 319 variable: blood (table[s]: ser_urinalysis, lab_urinalysis) urinalysis result: ph (D) 1001 320 1 5.0 24 2 6.0 376 3 6.5 191 4 7.0 103 5 7.5 91 6 8.0 112 7 8.5 104 8 Unknown 0 9 Missing 0 Sysmiss 320 variable: ph (table[s]: ser_urinalysis, lab_urinalysis) urinalysis result: protein (D) 1002 319 urinalysis result: protein 0 Negative 904 1 Trace 72 2 30 mg/dL (+) 18 3 100 mg/dL(++) 7 4 300 mg/dL(+++) 0 5 >2000 mg/dL 1 8 Unknown 0 9 Missing 0 Sysmiss 319 variable: protein (table[s]: ser_urinalysis, lab_urinalysis) urinalysis result: nitrites (D) 1002 319 0 Negative 983 1 Positive 19 8 Unknown 0 9 Missing 0 Sysmiss 319 variable: nitrites (table[s]: ser_urinalysis, lab_urinalysis) urinalysis result: leucocytes (D) 1002 319 0 Negative 863 1 Trace 139 2 Small (+) 0 3 Moderate (++) 0 4 Large (+++) 0 Sysmiss 319 variable: leucocytes (table[s]: ser_urinalysis, lab_urinalysis) urinalysis data availability (D) 1321 0 urinalysis data availability 0 Not available 319 1 Available 1002 this variable is created during the merge of urinalysis data to the main dataset and then is recoded to be binary available/not available. iohex start time? (D) 1001 0 iohex start time? variable: iohex (table[s]: ser_specimen, lab_specimen) date of iohex test (D) 1001 date of iohex test variable: datecoll (table[s]: ser_specimen, lab_specimen) iohex time 1 (D) 1001 0 iohex time 1 iohex time 2 (D) 1001 0 iohex time 3 (D) 1001 0 iohex time 4 (D) 999 0 Syringe number :0001-1001 (D) 968 353 Syringe number :0001-1001 variable: syr_numb (table[s]: arkk_syrweight, arkl_syrweight) Filled weight :5g-20g (D) 968 353 Filled weight :5g-20g variable: syr_fullweight (table[s]: arkk_syrweight, arkl_syrweight) After used weight:5g-20g (D) 968 353 variable: syr_usedweight (table[s]: arkk_syrweight, arkl_syrweight) used date (D) 968 used date variable: syr_used_date (table[s]: arkk_syrweight, arkl_syrweight) iohex data availability (D) 1321 0 0 Not available 320 1 Available 1001 this variable is created during the merge of iohex time data to the main dataset and then is recoded to be binary available/not available. iohex result 2 (D) 1001 320 10 <10 1500 >1500 iohex comment 2 (D) 981 0 iohex result 3 (D) 1001 320 iohex result 3 10 <10 1500 >1500 iohex comment 3 (D) 981 0 iohex result 4 (D) 1001 320 iohex result 4 10 <10 1500 >1500 iohex comment 4 (D) 981 0 Thawed 348 ok 633 iohex result 5 (D) 999 322 iohex result 5 10 <10 1500 >1500 iohex comment 5 (D) 979 0 Thawed 345 ok 634 iohex result data availability (D) 1321 0 iohex result data availability 0 Not available 320 1 Available 1001 this variable is created during the merge of iohex result data to the main dataset and then is recoded to be binary available/not available. gen chem sample fasting status (D) 1002 319 gen chem sample fasting status 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 245 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 319 variable: basefoll (table[s]: ser_specimen, lab_specimen) gen chem sample date of collection (D) 1002 variable: datecoll (table[s]: ser_specimen, lab_specimen) CRP result (D) 1002 319 ASOT result (D) 1002 319 gen chem results data availability (D) 1321 0 0 Not available 319 1 Available 1002 this variable is created during the merge of genchem data to the main dataset and then is recoded to be binary available/not available. schisto sample fasting status (D) 1001 320 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 244 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 320 variable: basefoll (table[s]: ser_specimen, lab_specimen) schisto sample collection date (D) 1001 2018-04-18 2019-06-01 schisto sample collection date variable: datecoll (table[s]: ser_specimen, lab_specimen) schisto result (D) 1001 320 schisto result 0 No 992 1 Yes 9 8 Unknown 0 9 Missing 0 Sysmiss 320 schisto test result data availability (D) 1321 0 0 Not available 320 1 Available 1001 this variable is created during the merge of schisto data to the main dataset and then is recoded to be binary available/not available. HBA1c sample fasting status (D) 1001 320 1 Visit 1 0 2 TSD/GSC-2 month follow up 0 3 ART-2 month follow up 0 4 Visit 4 0 6 6 month follow up 0 8 8 week follow up 0 9 9 month follow up 0 10 10 week follow up 0 12 12 month follow up 0 14 14 week follow up 0 15 15 month follow up 0 16 16 week follow up 0 18 18 month follow up 0 21 21 month follow up 0 24 24 month follow up 0 26 26 week follow up 0 27 27 month follow up 0 30 30 month follow up 0 33 33 month follow up 0 36 36 month follow up 0 39 39 month follow up 0 42 42 month follow up 0 52 ??? 0 100 Week O6 - Control 0 101 Week 26 - Control 0 102 Acute episode 0 103 AHS-Stage 1 0 104 ARV-Stage 1 0 105 Baby 1 0 106 Baseline fasting 244 107 Baseline 0 108 Baseline random 757 109 Child's sample 0 110 Cord blood 0 111 excluded - LIS hiv positives 0 113 Follow up 0 114 Glucose tolerance 0 115 iohex 1 0 116 iohex 2 0 117 iohex 3 0 118 iohex 4 0 119 IIB follow up 1 0 120 Initial screening 0 121 LIS clinical review 0 122 Mother's sample 0 123 Old - toxoplasmosis test required 0 124 Old 0 125 Pre baseline 0 126 Gates Controls suspected to be progressor 0 127 PVC follow up week 1 0 128 PVC 12 week follow up 0 129 PVC 18 week follow up 0 130 PVC 4 week follow up 0 131 PVC 6 week follow up 0 132 Randomisation screening 0 133 Stimulated with BCG 0 134 Unstimulated 0 135 0 136 Young - sickle cell test 0 137 NTN pilot1 0 998 Unknown 0 999 Missing 0 Sysmiss 320 variable: basefoll (table[s]: ser_specimen, lab_specimen) HBA1c sample collection date (D) 1001 HBA1c sample collection date variable: datecoll (table[s]: ser_specimen, lab_specimen) HBA1c result (D) 1001 320 HBA1c result variable: hba1c_units (table[s]: ser_hba1c, lab_hba1c) HBA1c test result data availability (D) 1321 0 0 Not available 320 1 Available 1001 this variable is created during the merge of hba1c data to the main dataset and then is recoded to be binary available/not available. ARK study id(D) 4002 0 ARK study id stid is added to the via using the specno/labno links on ser_specimen and lab_specimen Sample id (LLW) (D) 2008 0 Sample id (LLW) data were received with the variable Sample ID indicating the number, this is separated in specno for lilongwe sample and labno for karonga samples Sample id (KAR) (D) 2002 0 Sample id (KAR) data were received with the variable Sample ID indicating the number, this is separated in specno for lilongwe sample and labno for karonga samples Batch number (D) 4006 0 Batch number 0 Initial samples 80 1 Main batch 1 1928 2 Main batch 2 1998 batch is created when appending the 3 results together Box number (D) 3923 83 Box number box number comes directly from the results spreadsheet Position in box(D) 3926 80 Position in box position comes directly from the results spreadsheet Sample order(D) 4002 0 Sample order basefoll comes directly from the results spreadsheet Comment from SA lab(D) 3926 0 Comment from SA lab comment comes directly from the results spreadsheet Iohex result(D) 4006 0 Iohex result 10 <10 1500 >1500 the result comes directly from the results spreadsheet